PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13737_BGI-A2_v1.0
Common NameF383_08080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 486aa    MW: 50595.8 Da    PI: 9.3367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13737_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-056082123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C+k F r  nL+ H r H
  Cotton_A_13737_BGI-A2_v1.0 60 FVCEICNKGFQRDQNLQLHRRGH 82
                                89*******************88 PP

2zf-C2H215.84e-05136158123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC+ C+k +  +s+ k H++t+
  Cotton_A_13737_BGI-A2_v1.0 136 WKCERCSKKYAVQSDWKAHMKTC 158
                                 58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.18E-75982No hitNo description
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PfamPF121717.7E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355220101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.18E-7131157No hitNo description
SMARTSM0035577136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTVSTASGEA TASSLGNQIQ DNQLTGGGPP KKKRNLPGMP DPDAEVIALS PKTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSKEIRKRV YVCPEPSCVH HNPARALGDL  120
TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTI FSRRDSFITH  180
RAFCDALAEE SVRTQTIGVA NPEGNINVNG NGSGNTTMVG GGAAATLPPP QPLTPSTTSV  240
VSPGLSIQSS EVPENPMGLS PAAATTATTN VFASIFAPNS QPSKISAPSS FLQATTPLER  300
TSLSLSSPLY LSNNGSSIFT GPENDHCHYA PSPQPAMSAT ALLQKAAQMG AAASNPSLLR  360
GLGLAVSSAS PAGQDPNVKS ESNTATASLG LGFPSNGSSG LTNPIIGSSS LFGNKPTTLD  420
LLGLGMADSG ASSSGLSALL TSFGGGFNVG AATATSYGAG GSNNSPRETW EGGAERKPNG  480
PANAML
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444978.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-143IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0PUR90.0A0A0B0PUR9_G
STRINGPOPTR_0002s26430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-118C2H2-like zinc finger protein